Seminarios web

Recursos en línea y análisis de datos biológicos

Únete a nuestro nuevo webinar!

Visión general

Esta serie de seminarios web proporciona una descripción general de los recursos de datos disponibles públicamente, con énfasis en los proporcionados por el Instituto Europeo de Bioinformática

La serie forma parte del currículo del Máster en Biología Computacional en la Universidad de los Andes. Nos gustaría explorar la posibilidad de que otras universidades participen en este módulo en el futuro. ¿Por qué no unirse a nosotros para experimentar el módulo y obtener más información?

Tenga en cuenta que estos seminarios web normalmente no se grabarán porque forman parte de una clase de bioinformática en vivo. Deberás registrarte con anticipación para unirte. 

Audiencia

Esta serie es adecuada para estudiantes graduados y superiores en ciencias de la vida molecular, o incluso para cualquier persona que trabaje en ciencias biomoleculares que deseen familiarizarse con la riqueza de datos biológicos disponibles en el dominio público. También agradecemos la participación de los directores y profesores de los cursos, para que puedan evaluar si el contenido puede ser útil para sus propios cursos.

Resultados

  • Evaluar el papel de la bioinformática en la investigación de ciencias de la vida molecular.
  • Reconocer los principales tipos de recursos de datos públicos para la investigación biomolecular.
  • Seleccione los recursos apropiados para explorar conjuntos de datos de interés para su investigación
  • Describir las características clave de las bases de datos primarias y secundarias.
  • Listar estrategias para describir datos consistentemente
  • Identifique algunos de los diferentes tipos de análisis de datos que se pueden aplicar para resolver problemas biológicos

Programa

Serie de seminarios web 2019

Semana jueves fecha Hora de clase (UTC) Título Estudio previo al seminario web Entrenadora Página web y registro
1 8th August 14:30-15:50 Passport to a world of biodata - Cath Brooksbank and Alejandro Reyes https://www.ebi.ac.uk/training/events/2019/cabana-webinar-passport-world-biodata
2 15th August 14:30-15:50 Introduction to ontologies

http://drjamesmalone.blogspot.com/2018/03/hackers-guide-to-understanding...

http://drjamesmalone.blogspot.com/2012/06/common-ontology-questions-1-wh...

Ontogenesis knowledgeblog

http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.10...

Olamidipupo Ajigboye Registration link
3 22nd August 14:30-15:50 From papers to data with EuropePMC Europe PMC quick tour Maria Levchenko / Dayane Rodrigues Araujo  
4 29th August 14:30-15:50 Introduction to the European Variation Archive - Baron Koylass  
5 5th September 14:30-15:50 Ensembl 1 webinar - Emily Perry  
6 12th September 14:30-15:50 Ensembl 2 webinar - Emily Perry  
7 19th September 14:30-15:50 Exploring functional genomics with Expression Atlas Functional genomics I-II; Expression Atlas Quick Tour Nancy George / Silvie Fexova  
8 26th September 14:30-15:50 Introduction to Programmatic Access Take a rest... Alejandro Reyes  
9 3rd October - - - - -
10 10th October 14:30-15:50 Protein sequence to function with UniProt UniProt: Exploring protein sequence and functional information Hema Bye-A-Jee  
11 17th October 14:30-15:50 Functional analysis of proteins with InterPro InterPro: functional and structural analysis of proteins Lorna Richardson  
12 24th October 14:30-15:50 Understanding protein structures with PDBe PDBe - searching for biological macromolecular structures  David Armstrong / Deepti Gupta  
13 31st October 14:30-15:50 Exploring molecular interactions with IntAct IntAct: molecular interactions at EMBL-EBI To be confirmed  
14 7th November 14:30-15:50 Biological pathways with Reactome Reactome: exploring biological pathways Thawfeek Varusai  
15 14th November 14:30-15:50 Programmatic Access 2

Take a rest...

 

 

Serie de seminarios web 2018 

Jueves 15 de noviembre

09: 30–10: 50 hora de Colombia / 15: 30–16: 50 hora de verano británica / 14: 30–15: 50 UTC (verifica tu zona horaria)

Acceso programático 2

Con Leyla García, Senior Software Engineer - Martin team: Protein Function development  [sobre Leyla]

Registrarse para el webinar

Tome un RESTO de las búsquedas manuales y únase a nosotros en este seminario web para obtener más información sobre el acceso programático para los recursos de EBI con un énfasis especial en los servicios REST de UniProt.

Estudio Pre-Webinar: 

https://www.ebi.ac.uk/training/online/course/embl-ebi-programmatically-take-rest-manual-searches

Puede hacer preguntas y participar en discusiones con otros participantes usando Slack


Webinars anteriores en esta serie

Jueves 08 noviembre

09: 30–10: 50 hora de Colombia / 15: 30–16: 50 hora de verano británica / 14: 30–15: 50 UTC 

Vías biológicas con Reactome.

Con Thawfeek Varusai, Scientific Database Curator - Hermjakob team [sobre Thawfeek]

En este seminario web, aprenderá cómo usar Reactome de manera efectiva para buscar y acceder a vías biológicas y reacciones celulares. También podrá analizar datos experimentales utilizando las diversas herramientas disponibles en el recurso. 

Pre-webinar Study: 

Reactome: Exploring biological pathways

Reactome exercises

Estimated study time: 2.5 Hours

 

Thursday 01 November

 

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

 

Functional analysis of proteins with InterPro

 

With Lorna Richardson, Protein Family Curator - Finn team: Sequence families [about Lorna]

 

Lorna will give an overview of the information available in InterPro, and how InterPro data is used in large-scale analysis of proteins.

 

Pre-webinar Study:

 

Protein classification: An introduction to EMBL-EBI resources

 

InterPro: Functional and structural analysis of protein sequences

 

InterPro Exercises 

 

Estimated study time: 3 Hours

 

 

Thursday 25 October

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

 

Understanding protein structures with PDBe

With David Armstrong, Scientific Database Curator - Velankar team: PDBe [about David]

 

 

 

 


 

 

Thursday 18 October

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

 

Exploring molecular interactions with IntAct

With Birgit Meldal, Scientific Database Curator (Molecular Interaction & Complexes) - Molecular Interactions [about Birgit]

 

 


 

Thursday 11 October

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

 

Protein sequence to function with UniProt

With Leyla García, Senior Software Engineer - Martin team: Protein Function development  [about Leyla]

Register for the webinar

Registrants have the option to vote for the specific aspect of UniProt that is most relevant or of most interest to them. Options are

  • A practical walkthrough of the UniProt website for enzyme data
  • Exploring protein interactions with UniProt
  • Exploring models for human disease with UniProt

Registrants are first asked to complete the pre-webinar study before voting. Voting will close on 9th October. Complete the poll.

Pre-Webinar Study:

UniProt: Exploring protein sequence and functional information            

- UniProt website

- UniProt tools

Estimated study time: 2 Hours

 

 


 

Thursday 27 September

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

Introduction to the European Variation Archive

With Baron Koylass, Helpdesk Bioinformatician, EGA, EVA and ENA  [about Baron]

Baron will provide a showcase on how to access, submit and use data from all species and variant types using the European Variation Archive.

 


 

Thursday 20 September

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

Exploring functional genomics with Expression Atlas

With Laura Huerta Martinez, Senior Scientific Curator, Gene Expression [about Laura]

Laura will describe how to access and interpret gene expression analysis results with Expression Atlas. She will also explain downstream analysis results such as gene co-expression, transcript quantification and enrichment analysis.

Pre-webinar study

 

 

Estimated study time: 3-4 h

 

 


 

 

Tuesday 4 September to Thursday 13 September

09:00–10:50 Colombia time / 15:00–16:50 British Summer Time / 14:00–15:50 UTC (check your time zone)

Please note the earlier start time for these four webinars

Browsing genomes with Ensembl

Emily Perry, Ensembl Outreach Project Leader, EMBL-EBI [about Emily]

Astrid Gall, Ensembl Outreach Officer [about Astrid]

Erin Haskell, Ensembl Outreach Officer [about Erin]

 

Tuesday 4 Sep, 15:00 BST

  • Introduction to Ensembl
  • Ensembl region
  • Ensembl genes
  • Questions
  • Exercises as homework

Thursday 6 September, 15:00 BST

  • Variation data in Ensembl
  • Comparing genes and genomes
  • Questions
  • Exercises as homework

Tuesday 11 September, 15:00 BST

  • Finding features that regulate genes
  • Data export with BioMart
  • Questions
  • Exercises as homework

Thursday 13 September, 15:00 BST

  • Custom data
  • The Ensembl Rest API
  • Questions
  • Exercises as homework

Pre-webinar study

There is no pre-webinar study for this series; exercises will be provided at each webinar. If you would like to familiarise yourself with Ensembl before the webinar, take a look at...

Estimated study time: 3 h

 

 


 

 

Thursday 23 August

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

From papers to data with EuropePMC

Maria Levchenko, EuropePMC Community Manager, EMBL-EBI [about Maria]

Maria will give an introduction to literature and data searches in EuropePMC, EMBL-EBI's gateway to the life science literature.

Register for the webinar

Pre-webinar study

Estimated study time: 2–3 h

 


 

Thursday 16 August

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

An Introduction to Ontologies

Dani Welter, Ontologist, Human Cell Atlas, EMBL-EBI [About Dani]

Dani will explain what ontologies are and how they are used to improve searching and database interoperability.

Register for the webinar

Pre-webinar study

 

Estimated study time: 2–3 h

 


 

Thursday 9 August

09:30–10:50 Colombia time / 15:30–16:50 British Summer Time / 14:30–15:50 UTC (check your time zone)

Passport to a world of biodata

Cath Brooksbank, Head of Training, EMBL-EBI [about Cath]

Cath will provide an introduction to public data resources, with an emphasis on those provided by EMBL-EBI. She will summarise how data are collected and shared by the research community, why open data sharing is important, and touch on some of the different types of experiments that can be performed on biological data.

 Register for the webinar

Pre-webinar study

Estimated study time: 2–3 h